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S

save(String) - Method in class com.bayesia.api.APIInference
Saves the created network and its associated junction tree (if the inference type is EXACT_INFERENCE) into the file specified by the given path.
save(OutputStream) - Method in class com.bayesia.api.APIInference
Saves the created network and its associated junction tree (if the inference type is EXACT_INFERENCE) into the specified OutputStream.
save(String) - Method in class com.bayesia.api.APILearning
Saves the created network to the file specified by the given path.
save(OutputStream) - Method in class com.bayesia.api.APILearning
Saves the created network into the specified OutputStream.
save(String) - Method in class com.bayesia.api.APIModeling
Saves the created network to the file specified by the given path.
save(OutputStream) - Method in class com.bayesia.api.APIModeling
Saves the created network into the specified OutputStream.
save(OutputStream) - Method in interface com.bayesia.api.ResizableIcon
Save the current image into the given output stream.
setAllArcsDeleted(boolean) - Method in class com.bayesia.api.learning.settings.EQSettings
 
setAllArcsDeleted(boolean) - Method in class com.bayesia.api.learning.settings.GreedySettings
 
setAllArcsDeleted(boolean) - Method in class com.bayesia.api.learning.settings.TabooSettings
 
setArcComment(String, String, String) - Method in class com.bayesia.api.APIModeling
Set the comment associated to the arc between the nodes named nodeName1 and nodeName2.
setBackgroundImage(ResizableIcon) - Method in class com.bayesia.api.APIModeling
Sets the image associated to the network.
setClassFunctionNodeBooleanFormatter(String, BooleanFormatter) - Method in class com.bayesia.api.APIModeling
Sets the Boolean formatter to each not excluded function node of the given class.
setClassFunctionNodeNumberFormatter(String, NumberFormatter) - Method in class com.bayesia.api.APIModeling
Sets the Number formatter to each not excluded function node of the given class.
setClassFunctionNodeStringFormatter(String, StringFormatter) - Method in class com.bayesia.api.APIModeling
Sets the String formatter to each not excluded function node of the given class.
setClassNodeColor(String, Color) - Method in class com.bayesia.api.APIModeling
Sets the color for each node of the given class.
setClassNodeCost(String, Double) - Method in class com.bayesia.api.APIModeling
Sets a cost to each not excluded node of the given class.
setClassNodeExcluded(String, boolean) - Method in class com.bayesia.api.APIModeling
Indicates if each node of the the given class will be excluded or not from the structural learning.
setClassNodeImage(String, ResizableIcon) - Method in class com.bayesia.api.APIModeling
Sets an image to each node of the given class.
setClassNodeStateVirtualNumber(String, Integer) - Method in class com.bayesia.api.APIModeling
Sets the state virtual number to each not excluded node of the given class.
setClassNodeStateVirtualNumber(String, Double) - Method in class com.bayesia.api.APIModeling
Sets the structural coefficient to each not excluded node of the given class.
setClassNodeTemporalIndex(String, Integer) - Method in class com.bayesia.api.APIModeling
Sets a temporal index to each not excluded node of the given class.
setComment(String) - Method in class com.bayesia.api.APIModeling
Sets the comment associated to the network.
setConditionalProbabilityTable(String, double[]) - Method in class com.bayesia.api.APIModeling
Sets the conditional probability table for the specified node.
setDecisionTable(String, double[]) - Method in class com.bayesia.api.APIModeling
Sets the decision table for the specified node.
setDigits(int) - Method in class com.bayesia.api.format.NumberFormatter
Sets the number of decimals to display.
setFormula(String, String, boolean, int, int, boolean, long, boolean) - Method in class com.bayesia.api.APIModeling
Sets the formula describing the conditional probability table for the given node.
setFunctionNodeBooleanFormatter(String, BooleanFormatter) - Method in class com.bayesia.api.APIModeling
Sets the Boolean formatter of the function node.
setFunctionNodeNumberFormatter(String, NumberFormatter) - Method in class com.bayesia.api.APIModeling
Sets the Number formatter of the function node.
setFunctionNodeStringFormatter(String, StringFormatter) - Method in class com.bayesia.api.APIModeling
Sets the String formatter of the function node.
setGroupingUsed(boolean) - Method in class com.bayesia.api.format.NumberFormatter
Sets the grouping of the numbers (by 3) to the given value
setInferenceType(int) - Method in class com.bayesia.api.APIInference
Sets the type of inference to use.
setLetterCase(APIUtils.LETTER_CASE) - Method in class com.bayesia.api.format.StringFormatter
Sets the letter case used to format a value.
setLikelihood(String, String, double) - Method in class com.bayesia.api.APIInference
Sets the likelihood for a value of a node (soft evidence).
setLikelihood(String, short, double) - Method in class com.bayesia.api.APIInference
Sets the likelihood for a value of a node (soft evidence).
setLikelihoodFromMean(String, double, boolean) - Method in class com.bayesia.api.APIInference
Computes the likelihood for all the values of a node in order to have its mean equal to the specified one.
setLikelihoodFromProbabilities(String, double[]) - Method in class com.bayesia.api.APIInference
Computes the likelihood for all the values of a node in order to have its probabilities equal to the specified ones.
setLikelihoods(String, double[]) - Method in class com.bayesia.api.APIInference
Sets the likelihoods for all the values of a node.
setListLength(int) - Method in class com.bayesia.api.learning.settings.TabooOrderSettings
 
setListLength(int) - Method in class com.bayesia.api.learning.settings.TabooSettings
 
setMarkovBlanketRestrictionBlocked(boolean) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMarkovBlanketRestrictionEnabled(boolean) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMarkovBlanketRestrictionFixedSeed(boolean) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMarkovBlanketRestrictionFrequencyThreshold(double) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMarkovBlanketRestrictionSeed(long) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMarkovBlanketRestrictionTestCount(int) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMarkovBlanketRestrictionUsed(boolean) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setMaxChildNumber(int) - Method in class com.bayesia.api.learning.settings.TabooSettings
 
setMaxParentNumber(int) - Method in class com.bayesia.api.learning.settings.TabooSettings
 
setMostProbableExplanationUsed(boolean) - Method in class com.bayesia.api.APIInference
Enable or disable the most probable mode.
setNodeColor(String, Color) - Method in class com.bayesia.api.APIModeling
Sets the color of the node.
setNodeComment(String, String) - Method in class com.bayesia.api.APIModeling
Set the comment associated to the specified node.
setNodeCost(String, Double) - Method in class com.bayesia.api.APIModeling
Sets the cost of the node to the given double value.
setNodeExcluded(String, boolean) - Method in class com.bayesia.api.APIModeling
Indicates if the given node will be excluded or not from the structural learning.
setNodeFilteredState(String, short) - Method in class com.bayesia.api.APIModeling
Sets the node's filtered state.
setNodeImage(String, ResizableIcon) - Method in class com.bayesia.api.APIModeling
Sets an image to the node.
setNodeLongName(String, String) - Method in class com.bayesia.api.APIModeling
Set the long name associated to the specified node.
setNodePosition(String, double, double) - Method in class com.bayesia.api.APIModeling
Sets the position of the center of the node in double coordinates.
setNodeStateVirtualNumber(String, Integer) - Method in class com.bayesia.api.APIModeling
Sets the state virtual number of the node to the given Integer value.
setNodeStructuralCoefficient(String, Double) - Method in class com.bayesia.api.APIModeling
Sets the structural coefficient used for learning to the given Double value.
setNodeTemporalIndex(String, Integer) - Method in class com.bayesia.api.APIModeling
Sets the temporal index of the node to the given value.
setObservationValidityEnabled(boolean) - Method in class com.bayesia.api.APIInference
Sets the observation validity enabled or not.
setObservedMean(String, double, boolean) - Method in class com.bayesia.api.APIInference
Computes the likelihood for all the values of a node in order to have its mean equal to the specified one.
setObservedProbabilities(String, double[]) - Method in class com.bayesia.api.APIInference
Computes the likelihood for all the values of a node in order to have its probabilities equal to the specified ones.
setOutgoingArcFixed(boolean) - Method in class com.bayesia.api.learning.settings.MarkovBlanketSettings
 
setPercent(boolean) - Method in class com.bayesia.api.format.NumberFormatter
Sets the percent format to the given value
setPrefix(String) - Method in class com.bayesia.api.format.NumberFormatter
Sets the prefix of the formatted Number.
setReplacementValueFalse(String) - Method in class com.bayesia.api.format.BooleanFormatter
Sets the replacement value for the "false" state.
setReplacementValueTrue(String) - Method in class com.bayesia.api.format.BooleanFormatter
Sets the replacement value for the "true" state.
setSampleSize(int) - Method in class com.bayesia.api.APIInference
Sets the sample size used by approximate inference.
setScientificNotationUsed(boolean) - Method in class com.bayesia.api.format.NumberFormatter
Sets the scientific notation mode to the given value
setScore(int) - Method in class com.bayesia.api.learning.settings.MaximumSpanningTreeSettings
 
setSmoothedProbabilityEstimation(double) - Method in class com.bayesia.api.learning.settings.AbstractLearningSettings
Sets the weight of the non informative prior, i.e. the virtual case(s) spread uniformly across the joint probability distribution.
setStateLongNameAt(String, String, int) - Method in class com.bayesia.api.APIModeling
Sets the long name of the given state for the given node.
setStateLongNames(String, String[]) - Method in class com.bayesia.api.APIModeling
Sets the long names for the states of the specified node.
setStateValueAt(String, Double, int) - Method in class com.bayesia.api.APIModeling
Sets a value to the given state of the given node.
setStateValues(String, Double[]) - Method in class com.bayesia.api.APIModeling
Sets the values for each state of the given node.
setStructuralCoefficient(Double) - Method in class com.bayesia.api.APIModeling
Sets the global structural coefficient of the network for learning.
setStructuralCoefficient(double) - Method in class com.bayesia.api.learning.settings.AbstractLearningSettings
Sets the weight associated to the structural part used in the Minimum Description Length score.
setSuffix(String) - Method in class com.bayesia.api.format.NumberFormatter
Sets the suffix of the formatted Number.
setTargetNode(String, short) - Method in class com.bayesia.api.APIInference
Set the given node as target node with the given target state.
setTargetNodeName(String) - Method in class com.bayesia.api.learning.settings.SupervisedLearningSettings
 
setTime(int) - Method in class com.bayesia.api.APIInference
Performs a temporal simulation from the current time to the specified time.
setTimeUsed(boolean) - Method in class com.bayesia.api.APIModeling
Specifies we want to use the time counter in the network.
setTrailingZerosTrimmed(boolean) - Method in class com.bayesia.api.format.NumberFormatter
Sets the trim mode for the trailing zeros to the given value
setUnfixedArcsDeleted(boolean) - Method in class com.bayesia.api.learning.settings.EQSettings
 
setUnfixedArcsDeleted(boolean) - Method in class com.bayesia.api.learning.settings.GreedySettings
 
setUnfixedArcsDeleted(boolean) - Method in class com.bayesia.api.learning.settings.TabooSettings
 
setUtilityTable(String, double[]) - Method in class com.bayesia.api.APIModeling
Set the utility table for the specified decision node.
setVerbose(boolean) - Method in class com.bayesia.api.learning.settings.AbstractLearningSettings
Tells the learning algorithm to print output information to the standard output stream System.out during learning.
size() - Method in interface com.bayesia.api.Database
Return the size of the database, i.e. the number of examples in the database.
SopLEQSettings - Class in com.bayesia.api.learning.settings
Learning settings for the SopLEQ learning algorithm.
sortNodeNames(String[], APIUtils.NODE_SORTING_METHOD, boolean) - Method in class com.bayesia.api.APIModeling
Sort the given array containing the name of the nodes in the network sorted according to the APIUtils.NODE_SORTING_METHOD
StringFormatter - Class in com.bayesia.api.format
The class StringFormatter is used to format the computed FunctionValue of a function node, when the value is a String.
StringFormatter(APIUtils.LETTER_CASE) - Constructor for class com.bayesia.api.format.StringFormatter
Creates an instance with two specified letter case.
SupervisedLearningSettings - Class in com.bayesia.api.learning.settings
 
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